PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 149aa MW: 16569.4 Da PI: 10.4452 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.2e-14 | 35 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Sof018934 35 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 79 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.32E-17 | 29 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 30 | 84 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.7E-19 | 33 | 82 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 33 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 34 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-12 | 35 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.09E-9 | 37 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MVSASAPPPP QSDAAGSGED ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLFDRDWKKI 60 EAFVGSKTVI QIRSHAQKYF LKVQKNGTSE HVPPPRPKRK AAHPYPQKAS KNEPNYGLKT 120 DSSSIHRNPG MNVSGSSWAH KSIPQACGX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16027 | 1e-58 | crown| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452755.1 | 7e-99 | protein REVEILLE 6 isoform X3 | ||||
Refseq | XP_021313804.1 | 8e-99 | protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_021313805.1 | 8e-99 | protein REVEILLE 6 isoform X2 | ||||
Refseq | XP_021313806.1 | 6e-99 | protein REVEILLE 6 isoform X4 | ||||
Swissprot | Q8RWU3 | 4e-63 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A0C6WCP9 | 1e-100 | A0A0C6WCP9_9POAL; ScMYB40 protein | ||||
STRING | Sb04g031820.1 | 3e-98 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 5e-47 | MYB_related family protein |
Publications ? help Back to Top | |||
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