PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 152aa MW: 15744.6 Da PI: 9.7067 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2.1e-13 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky Sof018786 81 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 125 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-16 | 75 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.17 | 76 | 130 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.1E-19 | 79 | 128 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 80 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-10 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-11 | 81 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-7 | 83 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSTTPKPLDS AAVSAGAGAG GGGGGDEGGG GGGGGGGKKQ VRGAAAAAVM APPPMAVPAA 60 APAAGEEVRK VRKPYTITKS RESWTEPEHD KFLEALQLFD RDWKKIEAYV GSKTVIQIRS 120 HAQKYFLKVX KNGTGEHSLL CEPERAVAHL YL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16027 | 0.0 | crown| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656359.1 | 1e-56 | PREDICTED: protein REVEILLE 6-like isoform X3 | ||||
Refseq | XP_006656360.1 | 9e-57 | PREDICTED: protein REVEILLE 6-like isoform X4 | ||||
Refseq | XP_015693738.1 | 9e-57 | PREDICTED: protein REVEILLE 6-like isoform X2 | ||||
Swissprot | Q8H0W3 | 3e-44 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | J3MGQ6 | 2e-55 | J3MGQ6_ORYBR; Uncharacterized protein | ||||
STRING | OB06G32000.1 | 4e-56 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 2e-45 | MYB_related family protein |
Publications ? help Back to Top | |||
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