PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 16839.9 Da PI: 9.3366 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.9 | 8.9e-12 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g W+A Irdp+ + r++lg+f + e + +++a++ l+g Sof018748 91 QYMGVRLRP-WGTWAADIRDPV----QgVRVWLGTFPSSEANRLSYDHAARDLRG 140 599******.**********75....44**********9999999******9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.61E-17 | 90 | 145 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-13 | 91 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-15 | 91 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.714 | 91 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-21 | 91 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-6 | 92 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MCGGAILAEL IPSAPARRGG AAWPAGKGKQ RKADDFEAAF REFDEEMMEA GEEVEVVSQP 60 AFVLRASSFL PTKPRARQEE QPSLRRKPAQ QYMGVRLRPW GTWAADIRDP VQGVRVWLGT 120 FPSSEANRLS YDHAARDLRG PKAKLSCFSS CX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-14 | 90 | 146 | 4 | 61 | ATERF1 |
3gcc_A | 6e-14 | 90 | 146 | 4 | 61 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.7356 | 1e-107 | bud| callus| crown| leaf| meristem| root| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147529.2 | 2e-50 | ethylene-responsive element binding protein 2 | ||||
TrEMBL | B6STB6 | 2e-50 | B6STB6_MAIZE; Ethylene-responsive element binding protein 2 | ||||
STRING | AC206951.3_FGP017 | 7e-50 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-22 | ethylene-responsive element binding protein |