PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof018668

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

YABBY

Protein Properties

Length: 154aa MW: 15966.8 Da PI: 6.4848

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17385612	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	86.4	8e-27	19	118	5	95
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshld..eslkee.....lleelkveeenlksnvekeesasts 95 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ + + +hl+ +sl + ll+el + +l + + + + ++t Sof018668 19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlpPAAPXANHLNfgHSLLSPtsphgLLDELALQAPSLLMEQASANLSNTM 118 578********************************************98844455666666422344433566676666666666555555444433332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.2E-28	20	104	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSSSSSSSAA FPLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL 60 SVNLRGLLLP PAAPXANHLN FGHSLLSPTS PHGLLDELAL QAPSLLMEQA SANLSNTMTG 120 RSNKQCANNL AAAPMPAGTP VQDEPELAKX TGPL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14887	0.0	callus\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269\|PubMed:17216490, ECO:0000269\|PubMed:17676337}.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452852.1	8e-79	protein YABBY 4
Swissprot	A2X7Q3	1e-58	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-58	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	C5XS56	2e-77	C5XS56_SORBI; Uncharacterized protein
STRING	Sb04g033590.1	3e-78	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	5e-20	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]