PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | FAR1 | ||||||||
Protein Properties | Length: 154aa MW: 17500.2 Da PI: 4.5975 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.4 | 4.5e-08 | 120 | 153 | 2 | 39 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 fYn+YA++ GFsvrk+k ++ k++ k+ f Cs+eg Sof018666 120 FYNKYARDKGFSVRKQKVTRAKHS----KQLFLCSREG 153 9****************9999555....599*****99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-5 | 120 | 153 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
PNLPLEFWLK CGLNSGDKLQ PGLVMDNRGE DEHEEEMDFH LGTADDNSSN DENTSSNSSL 60 SSMRKEIGGD AKEMHRDGNC AYDQDIFTRI AAGAEMNNTL DEYWDIVQKT FATEGEAYIF 120 YNKYARDKGF SVRKQKVTRA KHSKQLFLCS REGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.8386 | 0.0 | meristem| root| stem |