PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||
Protein Properties | Length: 160aa MW: 18649.8 Da PI: 7.7122 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.9 | 1.3e-11 | 68 | 135 | 16 | 84 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 l + k++a +h +k ++ +tle+ ++++W k+ r s++ +l + W +Fv++n+++egD++++ Sof018303 68 LGITKEYAIAHFPDK--TTNVTLETpGKSKKWHPKFYKRDESRKNMLMGRWLDFVRDNHVQEGDICLLLP 135 678999999997554..4579****5566*******668888889*********************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-16 | 44 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-16 | 46 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.545 | 53 | 152 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.61E-15 | 67 | 147 | No hit | No description |
Pfam | PF02362 | 3.7E-10 | 68 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MASSSSEESG EDTMSENVSL EYVLAYRSYL SKAQKKRVMK LIQEIQPEFT IFISIMRWNN 60 VQPPGPFLGI TKEYAIAHFP DKTTNVTLET PGKSKKWHPK FYKRDESRKN MLMGRWLDFV 120 RDNHVQEGDI CLLLPTXDEI RYTFMIYVLH ETTHSGGXGW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9655 | 0.0 | seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466813.1 | 2e-99 | B3 domain-containing protein Os03g0619600 isoform X3 | ||||
Refseq | XP_021314996.1 | 2e-98 | B3 domain-containing protein Os03g0619600 isoform X1 | ||||
Swissprot | Q6AV22 | 9e-47 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A1D6KXR6 | 5e-89 | A0A1D6KXR6_MAIZE; B3 domain-containing protein | ||||
STRING | Sb01g014490.1 | 8e-99 | (Sorghum bicolor) |
Publications ? help Back to Top | |||
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