PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018255
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 161aa    MW: 17048.3 Da    PI: 9.5525
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17338106PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.26.3e-2923122195
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA +r+ +Pv+Gavg++ +++++l+q+ ++++
  Sof018255  23 SCNGCRVLRKGCSEACVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAVRTINPVHGAVGLLGTGNWHLCQAVVDTV 122
                6*********************9998656778*************************************************************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.42822128IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-2523119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
ELGGAKRSSR RRSRDDDGSS SMSCNGCRVL RKGCSEACVL RPCLQWIDAA DAQGHATVFV  60
AKFFGRAGLL SFISAVPDAQ RPALFQSLLY EAAVRTINPV HGAVGLLGTG NWHLCQAVVD  120
TVLRCGAIVP LPELGITGSA GNLYGPPGGG KRXLRVFTFS R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.155150.0bud| crown| inflorescence| meristem| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465083.11e-78LOB domain-containing protein 37
SwissprotQ9FN112e-64LBD37_ARATH; LOB domain-containing protein 37
TrEMBLC5WVK72e-77C5WVK7_SORBI; Uncharacterized protein
STRINGSb01g031790.14e-78(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.18e-65LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]