PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017749
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 168aa    MW: 18390 Da    PI: 11.8023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-274133734PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2058107255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Sof017749  58 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 107
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-2957117No hitNo description
SMARTSM003803.4E-3858121IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2358116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-3358116IPR001471AP2/ERF domain
PROSITE profilePS5103223.11758115IPR001471AP2/ERF domain
PRINTSPR003672.0E-115970IPR001471AP2/ERF domain
PfamPF008475.7E-1459107IPR001471AP2/ERF domain
PRINTSPR003672.0E-118197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGPMGLNQL GPAQIQQIQA QFMFQQQQRG LHAAFLGPRA QPMKQXRVAA LAPAQSKLYR  60
GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEDAALAYDK AAFRLRGDMA RLNFPALRRD  120
GAHLAGPLHA FVDAKLTAIC QSLAGSKRGS SRDESAAFPA GLPQVASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2354115163ATERF1
3gcc_A1e-2354115163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.31070.0callus| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953948.18e-84ethylene-responsive transcription factor RAP2-4
SwissprotO656652e-52ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLK3YU142e-82K3YU14_SETIT; Uncharacterized protein
STRINGSi017760m3e-83(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-40related to AP2 4