PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof017656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GeBP | ||||||||
Protein Properties | Length: 170aa MW: 18456.6 Da PI: 8.7216 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 68.1 | 1.9e-21 | 6 | 93 | 9 | 97 |
DUF573 9 eeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 e+De+ +LqGl+ + +g d++ fy+ +++s+ +++ ql+eK+rrLK+Kf+ ++++++ g +p+ ++hd+++++l++++W+ Sof017656 6 ESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKFRIMSARVAGGLDPARLAPHDRDVLHLCSRLWD 93 79************.556878888****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.2E-19 | 6 | 93 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
SASGPESDEL RFLQGLLGCG AQGLVFPRDL NVFYDRFSES MPQPYTRAQL SEKLRRLKNK 60 FRIMSARVAG GLDPARLAPH DRDVLHLCSR LWDPANAATS PFAASAGTSG NKRRRAKPRG 120 TPLPPPDASG DSNSHELHGI GSSAPGLFPD GSNGDDMFYL EQESGYLRQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 117 | NKRRRAKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.6945 | 0.0 | inflorescence| leaf| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464013.1 | 1e-105 | probable transcription factor At3g04930 | ||||
Refseq | XP_021307245.1 | 1e-105 | probable transcription factor At3g04930 | ||||
TrEMBL | C5WNQ3 | 1e-104 | C5WNQ3_SORBI; Uncharacterized protein | ||||
STRING | Sb01g010570.1 | 1e-104 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.1 | 2e-08 | DNA-binding storekeeper protein-related transcriptional regulator |