PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof017593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | Dof | ||||||||
Protein Properties | Length: 170aa MW: 18487.4 Da PI: 8.3137 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 62.2 | 9.5e-20 | 94 | 135 | 2 | 43 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkG 43 ++k+l+cp C+s++tkfCyynny+++qP f k+ +r Wt G Sof017593 94 PDKILPCPPCNSMDTKFCYYNNYNINQPXPFLKNLQRDWTGG 135 7899************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-12 | 90 | 135 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.0E-15 | 96 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 16.246 | 98 | 152 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGEGRAGDGL IKLFGKTIPV PETPAVGEAA KDIQQSGSSG TTDPKGQENT LQDSTGSPPQ 60 QEVADTEDSS AAKNSSADKQ QGEVANQKEK LKKPDKILPC PPCNSMDTKF CYYNNYNINQ 120 PXPFLKNLQR DWTGGVPFPK CLGVQARPKN QTALTRFHFP GEGRARFANW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468428.1 | 3e-82 | cyclic dof factor 1 isoform X1 | ||||
TrEMBL | C5WWR6 | 7e-81 | C5WWR6_SORBI; Dof-type zinc finger protein | ||||
STRING | Sb01g045840.1 | 1e-81 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-16 | cycling DOF factor 2 |