PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017589

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

YABBY

Protein Properties

Length: 171aa MW: 19064.9 Da PI: 9.051

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17467480	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	59	2.1e-18	1	48	1	48
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsv 48 +d++s+se++Cyv+C++Cnt+lav vP ++l+ +vtv+CGhC +l + Sof017589 1 MDMVSQSEHLCYVRCTYCNTVLAVGVPCKTLMDTVTVKCGHCNNLSYL 48 57899**************************************98554 PP
2	YABBY	89.9	6.5e-28	87	147	102	162
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 s ++e +pr+p v++PPek+ r Psaynrf++eeiqri a+ Pdi hreafs+aaknWa Sof017589 87 SPTSTELSPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIXAAKPDIPHREAFSMAAKNWAS 147 556778899**************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-45	6	147	IPR006780	YABBY protein
SuperFamily	SSF47095	1.31E-8	90	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-5	102	154	IPR009071	High mobility group box domain
CDD	cd00084	1.96E-4	109	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDMVSQSEHL CYVRCTYCNT VLAVGVPCKT LMDTVTVKCG HCNNLSYLSP RPPMVQPLSS 60 TDHPLGPFQC QGPCNECGRN QPLPLASPTS TELSPRMPFV VKPPEKKHRL PSAYNRFMRE 120 EIQRIXAAKP DIPHREAFSM AAKNWASATR AARRDCSAAL HSVRPKWPLS V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.4755	0.0	inflorescence\| leaf\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269\|PubMed:14729915}.

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468276.1	1e-102	protein DROOPING LEAF isoform X2
Swissprot	Q76EJ0	5e-92	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	C5NS03	1e-101	C5NS03_SORBI; DL related protein
STRING	Sb01g042850.1	1e-101	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-50	YABBY family protein