PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof017544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 17267.8 Da PI: 9.5038 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.3e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA r+ +Pv+Gavg++ +++++l+q++++++ Sof017544 2 SCNGCRVLRKGCSEACVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWHLCQAAVDTV 101 6*********************9998656778***************************************************************99987 PP DUF260 96 ll 97 l+ Sof017544 102 LR 103 76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.853 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEACVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGITGSAG 120 NIYGTPAGGK RAGGWSTFST AKRVRKAAVS AAGGGGGTGG AQAPVEAXXX X |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.15515 | 0.0 | bud| crown| inflorescence| meristem| seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983938.1 | 1e-92 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 4e-68 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A368SP59 | 2e-91 | A0A368SP59_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia03080.1.p | 2e-89 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-69 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|