PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof017300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 175aa MW: 18769.9 Da PI: 6.1149 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00052 | 60 | 94 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +i ++ + L++l+ + +K + a++L++A YIk L Sof017300 60 KIGERVAALQQLVSPF-----GKTDTASVLQEASXYIKFL 94 6667778888888887.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.357 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-11 | 48 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-5 | 50 | 99 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 59 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MAEVANHSKR NHADSYFSGK AVAAAAAATG PEELGSMSSK KPRNTNPRIA PVSPKEKKDK 60 IGERVAALQQ LVSPFGKTDT ASVLQEASXY IKFLHQQLEV LSSPYMACSP AAGTVPEDPE 120 HYSLRDRGLC LVPVDLTLEL TQSNGADLWA PATRTSAGEE RPVGLALAWP EEPAW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.10525 | 0.0 | callus| crown| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319652.1 | 5e-94 | transcription factor bHLH153-like | ||||
Swissprot | Q7XJU2 | 2e-39 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A1B6PLR5 | 1e-92 | A0A1B6PLR5_SORBI; Uncharacterized protein | ||||
STRING | Sb06g021190.1 | 2e-93 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 8e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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