PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof017204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C3H | ||||||||
Protein Properties | Length: 176aa MW: 18149.4 Da PI: 10.6713 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 86 | 111 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + t Ck+Gd+C+FaH++ Sof017204 86 KTRMCTKYNTTEGCKFGDKCHFAHSE 111 9***********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.582 | 84 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-8 | 84 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-14 | 85 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-6 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEGTAAARKR SRPETANGAV AGGKRSKVPL GARLVRDAIF CXFVPGGYPA VAKMLNLGSP 60 AVSAPSRTHV DHAALTGASH PASTGKTRMC TKYNTTEGCK FGDKCHFAHS ERELGKPAYM 120 SHEGPPMGGR YGGRPEPLQQ ASMGPPARNF GASATAKISV DGSPAGGIIR KGGVNT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.7565 | 0.0 | bud| crown| inflorescence| leaf| root| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447282.1 | 2e-97 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 7e-64 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | C5Y9Z9 | 4e-96 | C5Y9Z9_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032000.1 | 6e-97 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-09 | C3H family protein |
Publications ? help Back to Top | |||
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