PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof017043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20519 Da PI: 9.6299 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.8 | 8.6e-57 | 22 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdee++++yL++k+ ++++ vi evd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+++ +g lv Sof017043 22 LPPGFRFHPTDEEIISHYLTHKALNHRFVS-GVIGEVDLNKCEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDKEIFRGRGILV 120 79*************************888.99***************99999*********************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grap+gekt Wvmhe+rle Sof017043 121 GMKKTLVFYRGRAPRGEKTGWVMHEFRLE 149 **************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-65 | 15 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.099 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-29 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSEVSVINQA EVEDAGAGQL DLPPGFRFHP TDEEIISHYL THKALNHRFV SGVIGEVDLN 60 KCEPWDLPGR AKMGEKEWYF FCHKDRKYPT GTRTNRATET GYWKATGKDK EIFRGRGILV 120 GMKKTLVFYR GRAPRGEKTG WVMHEFRLEG KLSHPLPRFX KDEWAVCKVF NKELAARX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-56 | 13 | 173 | 6 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.13475 | 1e-111 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465330.1 | 1e-125 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 7e-87 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | C5X1Q2 | 1e-124 | C5X1Q2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g036590.1 | 1e-125 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 3e-89 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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