PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof016819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 19913.8 Da PI: 10.8436 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.1e-06 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Sof016819 78 FVCEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-5 | 76 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-6 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.4E-6 | 78 | 100 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASNSSAAAF FGVRDGDQQD QIKPLISPQQ QQAAALPGVA GAPTAAAQPP PKKKRTMPDP 60 DAEVIALSPK TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PLQAQRRRVY 120 LCPEPTCLQQ EPARALGDLA GIKKHFWPQX RGKKSGSAKQ CFKPLAVPSD WKAPSKICGT 180 R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.8485 | 0.0 | inflorescence| meristem| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446943.1 | 3e-94 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_021318855.1 | 3e-94 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8RWX7 | 6e-63 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | C5YE14 | 6e-93 | C5YE14_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Gb01057.1.p | 1e-94 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 2e-61 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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