PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof016818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 19712 Da PI: 10.7259 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.1 | 6.5e-32 | 116 | 174 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+ Sof016818 116 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 174 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.5E-17 | 69 | 113 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-34 | 103 | 175 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.033 | 110 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 113 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-38 | 115 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-27 | 117 | 173 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
XSGGGGGGKG VNLKFDSSNC TASSSRSFLS SLSMEGSLVS LDRNRASRPF QLVSGSQTSS 60 TPELGLVHRR RCAGREDGSG RCTTGSRCHC SKKRKLRIRR SIKVPAISNK VADIPSDEFS 120 WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP SMLIVTYEGD HNHNRVLAQP 180 A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 108 | 174 | 7 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.12814 | 0.0 | bud| crown| inflorescence| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466480.1 | 1e-109 | protein WRKY1 | ||||
Refseq | XP_020179772.1 | 1e-109 | protein WRKY1-like | ||||
Refseq | XP_021307146.1 | 1e-109 | protein WRKY1 | ||||
Swissprot | Q32SG4 | 1e-108 | WRKY1_MAIZE; Protein WRKY1 | ||||
TrEMBL | A0A3B6KP70 | 1e-109 | A0A3B6KP70_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TEA0 | 1e-109 | A0A446TEA0_TRITD; Uncharacterized protein | ||||
STRING | Sb01g008550.1 | 1e-108 | (Sorghum bicolor) | ||||
STRING | Traes_5DL_A54ED44C9.2 | 1e-109 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30590.1 | 7e-51 | WRKY DNA-binding protein 21 |