PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016689
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 183aa    MW: 20679.9 Da    PI: 5.1375
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-90492PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like262e-082174055
    G2-like 40 gLtlehvkSHLQkYRl 55
               g+t++hvkSHLQkYRl
  Sof016689  2 GITIYHVKSHLQKYRL 17
               89*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-7218IPR009057Homeodomain-like
PfamPF143798.5E-225095IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
XGITIYHVKS HLQKYRLAKY IPESPAEGSK DEKKDSSDSL SNTDSAPGLQ INEALKMQME  60
VQKRLHQQLE VQRQLQQRIE AQGRYLQMII EEQQKLGASI KASEDQKLSD SPPSLDDYPE  120
SMQPSPKKPR IDALSPDSER DRTQPEFESH LIGPWDQEIC GKNICGVAFP VEEFKADPGI  180
SKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.143390.0crown| inflorescence| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441302.11e-126myb family transcription factor PHL7
TrEMBLC5Z0881e-125C5Z088_SORBI; Uncharacterized protein
STRINGSb09g024090.11e-125(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.21e-27G2-like family protein