PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof016469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 21390.9 Da PI: 10.9972 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.4e-10 | 36 | 78 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + Sof016469 36 AWTHQEEENFFNALRQVGKN-FDKITHRVQ-SKNKDQVRHYYYRL 78 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-11 | 31 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.852 | 32 | 83 | IPR017884 | SANT domain |
SMART | SM00717 | 8.0E-7 | 33 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-6 | 35 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-8 | 36 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-6 | 36 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSFTGSAPEP SDSNKKPVFA LCLIFIAKKQ TRQWAAWTHQ EEENFFNALR QVGKNFDKIT 60 HRVQSKNKDQ VRHYYYRLVR RMKKLLGPSF SLDAKNSKDT IAAMLRWWSL LEKFSCSASK 120 LHLKPRRFKT FVEALGKQLL KDSKSTRKRS RVDMCLPSPS PIVSKAPGNE TPVKLLSLYA 180 QNGSKV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307529.1 | 1e-110 | TSL-kinase interacting protein 1 | ||||
Swissprot | Q8LJT8 | 1e-65 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A1B6QPF3 | 1e-109 | A0A1B6QPF3_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G152319_P02 | 1e-112 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 4e-68 | TSL-kinase interacting protein 1 |