PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof016141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 20991.5 Da PI: 9.9601 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.7 | 2.1e-13 | 77 | 167 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 +l +s+v++ ++v+p++ a ++++ ++ + +grsWe+++ + +++ l++GW+ F+ +n+Lk gD +vF+l g+ ++ ++v+v+r Sof016141 77 ILCKSHVHQPFQVVVPRSLAPFLP---ATTVPAKV-TWHGRSWEMRF--TXGRQIQRLEAGWRXFALDNDLKLGDGCVFELLdGKaEGVVFKVQVLR 167 567788888888899988885543...22222332.2699*******..88888899***********************55266666666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-16 | 71 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-16 | 71 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.70E-14 | 72 | 167 | No hit | No description |
PROSITE profile | PS50863 | 12.041 | 74 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-11 | 76 | 164 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
XRVLQESKSL RRPSRKAWLA NEVLMNKGKS VAMMSSPGHS GGESPADGAD PRPMSETPGA 60 MQSGVLPLLG KPYFTCILCK SHVHQPFQVV VPRSLAPFLP ATTVPAKVTW HGRSWEMRFT 120 XGRQIQRLEA GWRXFALDND LKLGDGCVFE LLDGKAEGVV FKVQVLRAHI PEEIRERAGG 180 YTSFTPILID |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15509 | 0.0 | bud| inflorescence| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319641.1 | 1e-104 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 9e-65 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A1B6PKA3 | 1e-102 | A0A1B6PKA3_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G126194_P01 | 2e-87 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-07 | B3 family protein |
Publications ? help Back to Top | |||
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