PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015827
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 194aa    MW: 21713.8 Da    PI: 7.983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17291772PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-182503886
               EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
               +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++
  Sof015827  2 FEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVHFERMR 50
               79********************************************664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.816165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-15264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-14251No hitNo description
PfamPF023624.9E-16251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-20269IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
XFEDEAGKPW RFRYSYWTSS QSYVLTKGWS RYVKEKQLDA GDVVHFERMR GFGLGDRLFI  60
SYRRRGESAT VAAAPPPPAV SVVAPAQSTG GEQQPWSPMC YSTSCSYPTS PANSHAYRHS  120
MDHYHSNMQH AGESQSDRDN RSCSAASAPL SRRLRLFGVN LDCGPAPELE PETPTAMYGY  180
MHQSLYPSNN WGSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-2426549113B3 domain-containing transcription factor NGA1
5os9_B3e-2426549113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.110460.0inflorescence| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450302.21e-106B3 domain-containing protein Os11g0156000
RefseqXP_025827830.11e-106B3 domain-containing protein Os11g0156000-like isoform X2
SwissprotQ53QI05e-82Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A2S3ICJ81e-105A0A2S3ICJ8_9POAL; Uncharacterized protein
TrEMBLC5Y5151e-104C5Y515_SORBI; Uncharacterized protein
STRINGSb05g003450.11e-104(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.15e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]