PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015783
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 194aa    MW: 22307.8 Da    PI: 11.8884
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-119329PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32116174159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Sof015783 116 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 174
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-34101174IPR003657WRKY domain
SuperFamilySSF1182906.67E-29108175IPR003657WRKY domain
PROSITE profilePS5081129.344111176IPR003657WRKY domain
SMARTSM007749.8E-37116175IPR003657WRKY domain
PfamPF031062.5E-25117173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
RLRPPPSTTT SMAMQQQQRR TLPFPLPQRG RRLLLLLTHG RRRRPAKKGR RRRMIAKQAK  60
AARPPRGKGA AVISEGSAAL GVGAVRMKKE GGGGKARRKV REPRFCFKTM SEVDVLDDGY  120
KWRKYGQKVV KNTQHPRSYY RCTQDNCRVK KRVERLAEDP RMVITTYEGR HVHSPSRDDD  180
DDAARANAEM SFIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27107173874Probable WRKY transcription factor 4
2lex_A2e-27107173874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.231730.0inflorescence| meristem| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132878.12e-76uncharacterized protein LOC100194371
SwissprotQ9SVB75e-56WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1E5WH294e-76A0A1E5WH29_9POAL; Putative WRKY transcription factor 13
STRINGGRMZM2G151444_P018e-76(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-49WRKY DNA-binding protein 13