PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015767 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21404.9 Da PI: 5.5085 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.3e-08 | 94 | 139 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 ++ rE+ RRd++N++f e +l + +K++K++iL A++ + Sof015767 94 TKASREKIRRDKLNKRFLEWGAILEPG---ETPKMDKSAILNDAIRAVG 139 5678**********************8...89*************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-11 | 82 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.103 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.10E-4 | 93 | 144 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-11 | 94 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-6 | 94 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-5 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MASPEGTTWV FDCPLMDDLA VAADFAAAPA GGFFWAAPPS LQPQVVQAPV QSVVAASAPN 60 PPCVEISSSV DCGQGKEQPT NKRPRSESTA EPSTKASREK IRRDKLNKRF LEWGAILEPG 120 ETPKMDKSAI LNDAIRAVGE LRSEAKKLKD SNESLQEKIK ELKAEKNESR DEKQRLKAEN 180 ESLEQQIKFL NARPX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.4905 | 0.0 | callus| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462974.1 | 1e-116 | transcription factor ILR3 isoform X2 | ||||
Swissprot | Q9FH37 | 2e-47 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | C5XAT2 | 1e-115 | C5XAT2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g035580.1 | 1e-115 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-45 | bHLH family protein |