PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C3H | ||||||||
Protein Properties | Length: 196aa MW: 20406 Da PI: 10.9856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.6e-07 | 36 | 60 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H Sof015594 36 KSKPCTKFFSTAGCPFGASCHFLHN 60 7789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.915 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 96 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDTGRKRTAP EAGANGAVGP KRARESETTQ MGVGSKSKPC TKFFSTAGCP FGASCHFLHN 60 FPGGYQAVSK MTNLGGPPVP APPGRMPMGP GGPDGPPSPA VKTRLCNKYN TAEGCKWGKQ 120 MPLCSWRERA WKAPADGQLD GSSSNGARAX RSLHAPGNAS PRHGSFLTIG ASATAKIRAM 180 HPLLRHHGKG GTTQSI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159827.1 | 6e-64 | zinc finger CCCH domain-containing protein 44-like isoform X2 | ||||
Swissprot | Q7F8R0 | 2e-57 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A3L6S111 | 4e-70 | A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1 | ||||
STRING | Pavir.Db00748.1.p | 2e-62 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-25 | C3H family protein |