PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 21676.4 Da PI: 4.537 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 2 | 46 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++++eE++ + ++qlG++ W++Ia++++ gRt++++k+ w+++l Sof015436 2 GNFSKEEEDAVISFHEQLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 46 79*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.3E-10 | 1 | 48 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.125 | 1 | 50 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.5E-14 | 2 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-12 | 2 | 51 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 2 | 47 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.97E-12 | 3 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
XGNFSKEEED AVISFHEQLG NRWSAIAAKL PGRTDNEIKN VWHTHLKKRL EPTNKPEQRG 60 AQAAGAGKKH RPKRGGAKKT TAPATTAPVS PERSAASSSV TESSSMMEQE QEQEQGNTGN 120 SPGFPKEESF TSSSDAEEFQ FDDTFWSETL SMPLESFDVP MEPSDALGAS SVGADGDLDY 180 WLRVFMESGD VHQELPQI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11076 | 0.0 | bud| callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448188.1 | 1e-111 | transcription factor MYB4 | ||||
Swissprot | Q7XBH4 | 4e-55 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | C5YCC8 | 1e-110 | C5YCC8_SORBI; Uncharacterized protein | ||||
STRING | Sb06g022660.1 | 1e-111 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 5e-28 | myb domain protein 15 |
Publications ? help Back to Top | |||
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