PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 20638.1 Da PI: 10.4486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.4e-13 | 25 | 69 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Sof015428 25 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 69 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.605 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-17 | 20 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 22 | 72 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-17 | 22 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-11 | 25 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-11 | 25 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.68E-11 | 25 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
GGGGGTHGDK GSSKSAEQER RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT 60 QVASHAQKYF IRLNSMNRER RRSSIHDITS VNNGDASTAQ GPITGQTNGQ AANPGKPSKQ 120 SPQPANTPPG VDAYGTTIGQ PVGGPLVSAV GTPVTLPVSA PPHLAYGMHA PVPGAVVPGA 180 PVNIAPMPYP MPPPSSHG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.2665 | 0.0 | bud| crown| inflorescence| leaf| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448771.1 | 1e-141 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 2e-76 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | C5YAI2 | 1e-140 | C5YAI2_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032880.1 | 1e-141 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 6e-67 | MYB family protein |
Publications ? help Back to Top | |||
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