PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 21834.5 Da PI: 11.0639 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa ++++a+ +l+g Sof015321 119 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEEAALRYDQAAYRLRG 168 59******9.**********966...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.51E-29 | 118 | 177 | No hit | No description |
SMART | SM00380 | 1.9E-31 | 119 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 119 | 177 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 119 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.524 | 119 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 120 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI QDASSAPHGS SPLLHPHQPL SPSSPFSFHQ VAAAAAYGGY 60 PFAAAAEGAG QLSPAQMQYI QARLHLQRQS TQSSVLGPRA QPMKASAATA PTPPRSQKLY 120 RGVRQRHWGK WVAEIRLPRD RTRLWLGTFD TAEEAALRYD QAAYRLRGDA ARLNFPDKRR 180 LLAARSTPSV ERPPQKKGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 118 | 176 | 4 | 63 | ATERF1 |
3gcc_A | 3e-19 | 118 | 176 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.20665 | 1e-173 | bud| crown| inflorescence| leaf| meristem| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956678.1 | 1e-101 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | K3ZVQ3 | 1e-100 | K3ZVQ3_SETIT; Uncharacterized protein | ||||
STRING | Si030684m | 1e-101 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 4e-40 | ERF family protein |