PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015236 | ||||||||
Common Name | ERF3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 20748.5 Da PI: 6.7457 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrdp+ ++r++lg+f+t+e+Aa+a++aa+++l+g+ Sof015236 26 RLRGVRKRP-WGRYAAEIRDPVL---KARVWLGTFDTPEQAARAYDAAARRLRGP 76 679******.**********744...5**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-13 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.25E-16 | 25 | 85 | No hit | No description |
SMART | SM00380 | 1.6E-31 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-9 | 27 | 38 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-29 | 28 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAPKRSTSPT GSSSGGVRAA ATEQPRLRGV RKRPWGRYAA EIRDPVLKAR VWLGTFDTPE 60 QAARAYDAAA RRLRGPGATT NYPAASEPMV PAVSGSAVLS ESSSSSSWSL LPESVTAAVA 120 APPPSLDLSL ALPASAAAAN TYQVFMDPTP ALLQFLPPKS EEEQSCSGSL SSSSGVFDAA 180 PPVGLGLDLN LALLPPAEMV M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 16 | 83 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.5220 | 0.0 | crown| leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821473.1 | 7e-66 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A4FS08 | 1e-137 | A4FS08_SACOF; Ethylene responsive transcription factor | ||||
STRING | Sb07g006195.1 | 1e-62 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-19 | ERF domain protein 11 |
Publications ? help Back to Top | |||
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