PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 23065.7 Da PI: 6.9861 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00072 | 56 | 93 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ Lrel+P+a K s + L k+v Y+ Lq Sof015154 56 RQLIQDRMKGLRELIPNA-----SKCSIDALLDKTVAYMLFLQ 93 677999***********9.....68888889999999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.597 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-5 | 56 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-6 | 56 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
XMNEGFISCA MTDGCMGINK TITEECLVES MHGINSAEIK RRCRKVELQK PRPRDRQLIQ 60 DRMKGLRELI PNASKCSIDA LLDKTVAYML FLQSVSEKAE KIQNTLEDKE SHNETKKQLE 120 GCPLRVEELN QPGHLLIEML CEDYEVFLEM AQVLKGLKVS ILKGVLEHRS DKLWARFVIE 180 GSDGFNQMQI LCPLMHLLSR R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307839.1 | 1e-134 | transcription factor EMB1444 isoform X3 | ||||
TrEMBL | A0A1B6Q8K3 | 1e-130 | A0A1B6Q8K3_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G404922_P01 | 1e-120 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 4e-40 | conserved peptide upstream open reading frame 7 |