PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 21135.7 Da PI: 8.7739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.4e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksFs+ L H +H Sof015015 84 FRCSVCGKSFSSYQALGGHKTSH 106 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H Sof015015 161 HRCSICHKEFPTGQALGGHKRKH 183 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.63E-9 | 84 | 106 | No hit | No description |
SMART | SM00355 | 0.0054 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.926 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 84 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.6E-13 | 84 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.63E-9 | 156 | 183 | No hit | No description |
Pfam | PF13912 | 8.6E-13 | 160 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 161 | 183 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 161 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 163 | 183 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MELLHAVIPE KQSEEEAVAL MAPAATTTTT SSSGDEVAHV PQGWAKKKRS RRQRSEEENL 60 ALCLLMLSRG GNHRVQAAPV AAEFRCSVCG KSFSSYQALG GHKTSHRVKL PTPPAAAVVP 120 AAVPLVEVVI PPPPVEVVVR EPATSSTAAS SDGAAASSRV HRCSICHKEF PTGQALGGHK 180 RKHYDGGVGS SAASTDVLAT AAX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18650 | 0.0 | crown| leaf| meristem| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463836.1 | 1e-84 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 2e-68 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | C5X031 | 2e-83 | C5X031_SORBI; Uncharacterized protein | ||||
STRING | Sb01g007170.1 | 4e-84 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 4e-21 | zinc-finger protein 1 |