 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sof014972 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 204aa MW: 21880.3 Da PI: 10.0106 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38.6 | 1.9e-12 | 1 | 41 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq
Sof014972 1 QKRRDRINQKMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 41
69******************7.....5******************9 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.345 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.0E-15 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.31E-15 | 1 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.0E-11 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 6.7E-10 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 3.92E-14 | 1 | 45 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 204 aa Download sequence Send to blast |
QKRRDRINQK MKTLQKLVPN SNKTDKASML DEVIDYLKQL QAQVQAMSRM SSLMMPMGMA 60 MPQLHQMSVM AQMAQMAQVA HTMAQGMMNM GSLAQQGYAG LTTPMMHPPP PFVPMPWDPA 120 AAAAAATTSS AAGPGPAAAA TSVAQQPGGG TAVPDAFSAF LACQAQQNGQ QQQPGSMEAY 180 NRMVALYQKM NQLHQSEPSN PSKQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008658346.1 | 5e-64 | transcription factor UNE10 isoform X3 | ||||
| TrEMBL | A0A1D6K8G4 | 6e-58 | A0A1D6K8G4_MAIZE; Transcription factor UNE10 | ||||
| TrEMBL | A0A317YDQ7 | 5e-58 | A0A317YDQ7_MAIZE; Transcription factor UNE10 | ||||
| STRING | OB10G25310.1 | 8e-53 | (Oryza brachyantha) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00050.1 | 2e-20 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|