PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof014384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 22447.5 Da PI: 11.5074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 13 | 57 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Sof014384 13 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 57 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.186 | 6 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-18 | 9 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-11 | 10 | 60 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-18 | 11 | 61 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 12 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-12 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-10 | 13 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
HGSTHASASP GVPWTEDEHR RFLAGLEKLG KGDWRGISRH FVTTRTPTQV ASHAQKYFLR 60 QSSLTHKKRR SSLFDVVENA DRAATSSIKD REQRLRLKDA IATTASAAAP GTTTPELPAL 120 SLGIISRPAR RPDYVALPPT SLSLQLPRYS AAMGSASPSL ALAAPKHHHP SSTLTAAAKA 180 SSSRALPDLE LKISPPGRVT PFLGTIRVI |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.12893 | 2e-92 | bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455021.1 | 1e-101 | transcription factor MYBS3 | ||||
TrEMBL | A0A059PYW3 | 1e-107 | A0A059PYW3_9POAL; MCB2 protein | ||||
STRING | Sb03g003100.1 | 1e-101 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 6e-34 | MYB_related family protein |