PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof014291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23472 Da PI: 10.7381 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 125 | 172 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ Sof014291 125 AWTLCEVVKLVDGVARFGAGKWSEIRKLSFasySYRTSVDLKDKWRNL 172 7************************9999999*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.538 | 118 | 177 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-12 | 120 | 175 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-14 | 120 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-6 | 122 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.84E-17 | 124 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
XNEADSLGTI YPTRKDTLGG FSVHVPYVSR MRRGRPRKDF ISFADKEPSV EPKGIQTAVE 60 MILAKDVDKG NHLRKAPEVP LNVSSEKGHI EAVDSKGVQN LQAKVYSAVA KPKIKRGLTR 120 KHHRAWTLCE VVKLVDGVAR FGAGKWSEIR KLSFASYSYR TSVDLKDKWR NLIRATKTQL 180 PAQKDGACPR KINPSIIPIP PSILFVVKEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 37 | RRGRPRK |
2 | 31 | 38 | RRGRPRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.6219 | 1e-108 | bud| crown| inflorescence| leaf| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314012.1 | 1e-131 | uncharacterized protein LOC110434400 isoform X2 | ||||
TrEMBL | A0A059Q1M8 | 1e-146 | A0A059Q1M8_9POAL; MYB-related protein | ||||
STRING | Sb04g034770.1 | 1e-128 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 2e-34 | TRF-like 6 |