PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof014133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 24237.5 Da PI: 9.6762 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 48 | 92 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Sof014133 48 GRMSPHEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 92 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-9 | 27 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.426 | 27 | 41 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.08E-22 | 27 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.302 | 42 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-16 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 48 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-12 | 49 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 55 | 93 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
XKVANINVFL SNQPSSYYVL YVHAGLNRTG KSCRLRWVNY LHPGLKHGRM SPHEERLIIE 60 LHARWGNRWS RIARRLPGRT DNEIKNYWRT HMRKKAQERK MSMSSPSSSS SSLTYQACLL 120 DTVPVTGMGS ADTHNGSCVT SALENTQSAM DGYPMDQIWK AIEAPQAPAL LGIAERKEKT 180 CSSIPCHLPS PAMWDYKYSE VFWKKEDQEI MM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-18 | 14 | 96 | 24 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-18 | 14 | 96 | 78 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-18 | 14 | 96 | 78 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-18 | 14 | 96 | 24 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-18 | 14 | 96 | 24 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9065 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317161.1 | 1e-120 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 2e-92 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | C3S3G1 | 1e-122 | C3S3G1_SACOF; MYB transcription factor MYBAS1 | ||||
TrEMBL | F2W403 | 1e-122 | F2W403_9POAL; MYB transcription factor variant 1 | ||||
STRING | GRMZM2G048136_P02 | 1e-117 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 2e-48 | myb domain protein 59 |
Publications ? help Back to Top | |||
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