PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof013709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C3H | ||||||||
Protein Properties | Length: 216aa MW: 22973.7 Da PI: 8.3765 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1.1e-08 | 53 | 79 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Ck G Ck++H++ Sof013709 53 PGQPECQYFMRTGGCKSGTMCKYNHPR 79 5789*********************96 PP | |||||||
2 | zf-CCCH | 33.4 | 7.8e-11 | 102 | 125 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a++G+C+yG Ck+ H++ Sof013709 102 QPCAYYAQNGYCRYGVACKYDHPM 125 69********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.9E-5 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-6 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-5 | 56 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 102 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 102 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
PVACATGLEF RVDATRPHGS STTIAYGGAY LPYSSSTGRS SNNHQEHGFP ERPGQPECQY 60 FMRTGGCKSG TMCKYNHPRD WSTPKSNYMF SHLCLPLRPG AQPCAYYAQN GYCRYGVACK 120 YDHPMGTLGY SSSALPLSDM PIAPYPIGFS VATLAPSSSS PEYISTKDPS INQVASPVAA 180 PEHVGAILPK GVFPSDTIMR TQTSTSVGSS SPGGGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.13084 | 1e-59 | bud| crown| inflorescence| meristem| root| seed |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457593.1 | 1e-118 | zinc finger CCCH domain-containing protein 6 isoform X3 | ||||
Swissprot | Q5NAW2 | 1e-105 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A059Q170 | 1e-125 | A0A059Q170_9POAL; Zinc finger CCCH type domain-containing protein | ||||
STRING | Sb03g009930.1 | 1e-118 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-43 | C3H family protein |
Publications ? help Back to Top | |||
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