PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | SBP | ||||||||
Protein Properties | Length: 223aa MW: 24184.5 Da PI: 5.026 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 85.6 | 6.3e-27 | 152 | 210 | 1 | 59 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 +CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqC rf l+ef e+k Sof012970 152 ACQVEGCGADLTAAKDYHRRHKVCEMHAKASTAVVGNTVQRFCQQCNRFQLLQEFHERK 210 5*******************************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-29 | 145 | 210 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.495 | 150 | 223 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-26 | 151 | 211 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-21 | 153 | 210 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEAARFGTQS SHLYGGGLGE LDLNRRENRV FGWDLNDWSW DSQRFVATPV PAEAANGSGL 60 NSSPSTSEEA EEEMARNGGL RGDTDKRKRV VVIDDDDETE DQDTVVNGGG LLSLRVGGSA 120 VGVGAMEKSD VNEDERNGKK IRVQGGSSSG PACQVEGCGA DLTAAKDYHR RHKVCEMHAK 180 ASTAVVGNTV QRFCQQCNRF QLLQEFHERK AKLPGDAYHA TID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-24 | 149 | 206 | 2 | 59 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15884 | 0.0 | inflorescence| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466159.1 | 1e-115 | squamosa promoter-binding-like protein 6 | ||||
Swissprot | Q75LH6 | 2e-86 | SPL6_ORYSJ; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | C5WU18 | 1e-114 | C5WU18_SORBI; Uncharacterized protein | ||||
STRING | Sb01g002530.1 | 1e-114 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 4e-26 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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