PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012849 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25167.1 Da PI: 9.6162 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 4.9e-15 | 142 | 219 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k++++s+v++ +l lp +f++++ +++ ++lede+g +++ + +++ + l++GW++ + ++L+egD++ F+l Sof012849 142 FVKTMVRSHVSSCFWLGLPTSFCKDNLP--SKEFRMVLEDEEGVEFDAVY--IGNRPG--LSGGWRGLAMHHNLEEGDSLFFEL 219 89*********************99953..35678***************..555434..**********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-16 | 134 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-20 | 136 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-22 | 140 | 219 | No hit | No description |
Pfam | PF02362 | 6.0E-14 | 142 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-9 | 142 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 142 | 224 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAAKASSAAA SGAAYEEQRR KRVLENLKHL EDLGIKEMSK SLLQAARLQK QNKAGVCASP 60 KARKKFDATE VRRSSRAKTT VSYKDDFGEL DTFLRGTRRS GGRNTEHGRE YTGRISSYQQ 120 QQHAFRKAEK LQDSLDPNNP SFVKTMVRSH VSSCFWLGLP TSFCKDNLPS KEFRMVLEDE 180 EGVEFDAVYI GNRPGLSGGW RGLAMHHNLE EGDSLFFELP ELGX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.10448 | 0.0 | callus| crown |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141031.1 | 1e-139 | uncharacterized protein LOC100273110 | ||||
Swissprot | Q5KQI4 | 1e-107 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | B4FSX9 | 1e-137 | B4FSX9_MAIZE; Putative B3 domain-containing protein | ||||
STRING | GRMZM2G174610_P01 | 1e-138 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-43 | B3 family protein |
Publications ? help Back to Top | |||
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