PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25458.2 Da PI: 10.0644 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ Sof012633 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.147 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.1E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.49E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MELNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAMNNG TSPGQAHDID IPPPRPKRKP NSPYPRKSGL SSETTTKELP 120 NDKSTKPNMP LSNGNVQMAG DASLQKFQRK ELSEKGSCSE VLNLFRDAPS ASFSSVNKSS 180 SNHGAPRGIE ASKTKIRDMT IMENNSLNPN TQEDVKENSD QENEKX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400457.1 | 1e-134 | LHY protein isoform X2 | ||||
TrEMBL | A0A0C6WCN0 | 1e-139 | A0A0C6WCN0_9POAL; ScMYB43 protein | ||||
STRING | Sb07g003870.1 | 1e-127 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 2e-44 | MYB_related family protein |