PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-YC
Protein Properties Length: 227aa    MW: 24554.2 Da    PI: 5.254
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17456978PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC104.75.9e-33131225192
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace + ++  +      +  +   l  +diaaa+trtdi+dfl
  Sof012580 131 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEGVHIKADIEVMDAHRGEQAPDLAENDIAAAITRTDIYDFL 225
                89******988889******************************************99999999877777778889******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.86E-16111225IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.8E-21145216IPR009072Histone-fold
PfamPF008088.2E-10153185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
XLPTPDSAAS ADGCRRRRAP PPLAPARVGV DTAAAAAVQG PSRVWTVIDF GXNKMEPSSQ  60
PQPVMGVGSQ PYPAAAAYAP TTMVPGAPAV PPGSQPAAPF PNPAQLSAQH QMVYQQAQQF  120
HQQLQQQQQQ QLREFWTTQM DEIEQTTDFK NHTLPLARIK KIMKADEDVR MISAEAPVVF  180
AKACEGVHIK ADIEVMDAHR GEQAPDLAEN DIAAAITRTD IYDFLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-34138225289NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61900.0crown| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951763.14e-72nuclear transcription factor Y subunit C-4
RefseqXP_004951764.14e-72nuclear transcription factor Y subunit C-4
RefseqXP_004951765.14e-72nuclear transcription factor Y subunit C-4
RefseqXP_004951766.14e-72nuclear transcription factor Y subunit C-4
SwissprotQ655V57e-55NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLK3YV539e-71K3YV53_SETIT; Uncharacterized protein
STRINGSi018151m1e-71(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-37nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]