PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof012577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 227aa MW: 24182.6 Da PI: 9.9144 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 202.2 | 1.6e-62 | 13 | 161 | 2 | 148 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqsslk 99 g++r pt ErEnn+rRERrRRaiaaki+aGLRa+Gny lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kpl e+++ +g+sas sp+ss+q Sof012577 13 GGTRVPTYMERENNRRRERRRRAIAAKIFAGLRAYGNYSLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPLatERPDPIGRSASPSPCSSYQ---- 108 789************************************************************************999******************.... PP DUF822 100 ssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148 +sp++sy++sp+sssfps+ s+++i+l + +sl+p+l++ls++ss Sof012577 109 ----PSPRASYNPSPASSSFPSSGSSSHITLGGNnfmggvegNSLIPWLKNLSSSSS 161 ....*************************999889****************998655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 9.0E-68 | 13 | 157 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MTSGAGGAAA GIGGTRVPTY MERENNRRRE RRRRAIAAKI FAGLRAYGNY SLPKHCDNNE 60 VLKALCNEAG WTVEPDGTTY RKGCKPLATE RPDPIGRSAS PSPCSSYQPS PRASYNPSPA 120 SSSFPSSGSS SHITLGGNNF MGGVEGNSLI PWLKNLSSSS SFASSSKXPQ LHHLYFNGGS 180 ISAPGTPSXS SPTRTPXIKT DWENPNGQPP WGCAKYAXXP TPTAEPW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-24 | 35 | 87 | 391 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-24 | 35 | 87 | 391 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-24 | 35 | 87 | 391 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-24 | 35 | 87 | 391 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.11195 | 0.0 | crown| inflorescence| meristem| root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437132.1 | 1e-103 | protein BZR1 homolog 3 | ||||
Swissprot | Q5Z9E5 | 1e-93 | BZR3_ORYSJ; Protein BZR1 homolog 3 | ||||
TrEMBL | C5Z4I1 | 1e-102 | C5Z4I1_SORBI; Uncharacterized protein | ||||
STRING | Sb10g021750.1 | 1e-102 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75080.2 | 4e-26 | BES1 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|