PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25563.2 Da PI: 8.2265 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.6 | 7.1e-16 | 129 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++ +++s+v++ +l lp f+ +h k ++ t+tl de+ + + + k+ + l++GWkeF+ +++L +gD +vF+l+++++f +v ++r+ Sof012503 129 FIQPMIQSHVTRGFWLGLPTYFCPKHLPK--SDETITLVDEEDDESDTLY--LAKKAG--LSTGWKEFAIEHKLHDGDCLVFQLIEQTKF--KVYIIRA 219 8899**********************433..5569*****9999888888..444433..9***********************987777..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-21 | 123 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 124 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.86E-23 | 127 | 218 | No hit | No description |
SMART | SM01019 | 1.4E-15 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-13 | 129 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAEAVAVPVA VAYEEQRQRQ IEANKRKLEE LQLHRLSAAV KEAAAAAKPS SAKKGKARVP 60 RDGAAAGAEP LRRSGRLADL PEKPVYHHVR VRKLPKYNAR VPLDAAERSY DISKAEELVQ 120 DLGSSFPIFI QPMIQSHVTR GFWLGLPTYF CPKHLPKSDE TITLVDEEDD ESDTLYLAKK 180 AGLSTGWKEF AIEHKLHDGD CLVFQLIEQT KFKVYIIRAT LYFESEH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448540.1 | 1e-130 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 2e-86 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A1Z5RF03 | 1e-128 | A0A1Z5RF03_SORBI; Uncharacterized protein | ||||
STRING | Sb06g028730.1 | 1e-129 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 7e-43 | B3 family protein |
Publications ? help Back to Top | |||
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