PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25132 Da PI: 6.0594 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 1e-11 | 66 | 108 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Sof012104 66 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 108 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.69E-5 | 52 | 113 | No hit | No description |
PROSITE profile | PS50888 | 14.951 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-16 | 64 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-12 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 66 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 66 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.95E-5 | 159 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
GFLDVVEPKA AAALDDGVAA GLGVCKVEPG LVESSGAFGP GSVVAPPAAP ASKKKRVEGM 60 PPKNLMAERR RRKRLNDRLS MLRSVVPKIS KMDRTSILGD TIDYMKELLE RIKLLQEEND 120 QQQQEAPGML SVFRELNPNE MVARNTPKFD VERKEGGDTR VEIYCAAKPG LLLSTVSTLD 180 TLGLDIQQCV ISCFNDFGMH ASCSEMQRDM ISADAIKQEL FKNAGYGGGC L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 73 | KKRVEGMPPKNLMAERRRRKR |
2 | 67 | 74 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.19507 | 4e-60 | callus| crown| inflorescence| meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142220.1 | 1e-127 | uncharacterized LOC100274388 | ||||
Swissprot | Q9LSL1 | 1e-70 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A1D6GWK9 | 1e-126 | A0A1D6GWK9_MAIZE; Transcription factor bHLH93 | ||||
TrEMBL | A0A3L6EVM3 | 1e-126 | A0A3L6EVM3_MAIZE; Transcription factor bHLH93 | ||||
TrEMBL | B4G0M3 | 1e-126 | B4G0M3_MAIZE; Uncharacterized protein | ||||
STRING | Sb10g030470.1 | 1e-120 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-57 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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