PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof011892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 24372.1 Da PI: 5.9494 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.6e-14 | 113 | 159 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L Sof011892 113 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 159 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.628 | 110 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-11 | 113 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.49E-15 | 113 | 162 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-15 | 113 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-15 | 114 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-13 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MWEGGIEHGS QEATHQLLPW LGAAPFSEPA AVAGLGAAMG AYACGDGVGE LGLGHGGVFG 60 FGFDAVQQQQ QQQRAAEGSG KAVVSGLLGS LQAELGRMTA REMMDAKALA ASRSHSEAER 120 RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVLDHVKELK RQTSAMMMAT TVGGDDGGAA 180 XRAQQQLLPT EADELSVDAG ADGAGRLVVR ASLCCEDRPD LIPDIVRALA ALX |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.15674 | 0.0 | bud| inflorescence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462365.1 | 1e-116 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 7e-50 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | C5XC82 | 1e-114 | C5XC82_SORBI; Uncharacterized protein | ||||
STRING | Sb02g024460.1 | 1e-115 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-43 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|