PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26120.5 Da PI: 10.2807 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.3 | 7.5e-33 | 15 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tks 80 lp+G++F+Ptd+el+ e+L+ k++ ++ + +e+i+++d i++++P++Lp v+++ +fF++ +++y+tg+rk+r+ + Sof011716 15 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplV--DEFIPTIDgengICYTHPERLP-GVSKDGLVRHFFHRPSRAYTTGTRKRRKvhsgdgddggGGE 110 799************.99****999886664332..233555544445**********.555666688******************85666666655446 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vl+ +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l Sof011716 111 TRWHKTGKTRPVLC-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 159 78************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-39 | 7 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.164 | 15 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-15 | 16 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
XGRQESTTIQ DLPGLPAGVK FDPTDQELLE HLEGKARPDT RKLHPLVDEF IPTIDGENGI 60 CYTHPERLPG VSKDGLVRHF FHRPSRAYTT GTRKRRKVHS GDGDDGGGGE TRWHKTGKTR 120 PVLCNGRPRG YKKILVLYTN YGKQRKPEKT NWVMHQYHLG SDEEERDGEL VVSKVFFQTQ 180 PKQCGSTMAQ GGRRRRRHRA AGKHLAAGHH QGGGGGGGGX LRDANGGVDQ FYSPX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-11 | 14 | 159 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440245.1 | 1e-130 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-108 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A3L6E857 | 1e-131 | A0A3L6E857_MAIZE; NAC domain-containing protein 73 | ||||
STRING | Sb09g028430.1 | 1e-130 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-107 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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