PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25093.2 Da PI: 9.8818 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 130 | 177 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h+e+ErrRR+riN + +Lr+llP+ +K +Ka+ L + +++k+L+ Sof011588 130 RSHSEAERRRRQRINGHLVRLRSLLPNT-----TKTDKASLLDXVLDHVKELE 177 78*************************9.....8****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.38 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 130 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-11 | 130 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.78E-14 | 130 | 179 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 131 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
ESPGRATRPS KTDRKLSSRA AMWEGGMGHG SQEATHQLLP WLGAAPFSEP AAVAGLGAAM 60 GAYACGDGVG GLGLGHGGVF GFGFDAVQQQ CAAEGSGKAV VSVLLGSLQA ELGRMTAREM 120 MDAKALAASR SHSEAERRRR QRINGHLVRL RSLLPNTTKT DKASLLDXVL DHVKELERQT 180 SEMMMANTVG GDDRGAAGWT HNRCCRQRPT NCPWTPGQRT LDGRGGAAVC SLIKRQI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15674 | 0.0 | bud| inflorescence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462365.1 | 1e-72 | transcription factor bHLH30 | ||||
TrEMBL | C5XC82 | 2e-71 | C5XC82_SORBI; Uncharacterized protein | ||||
STRING | Sb02g024460.1 | 4e-72 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 3e-23 | bHLH family protein |