PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | SBP | ||||||||
Protein Properties | Length: 238aa MW: 25846 Da PI: 10.0796 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 117.8 | 5.6e-37 | 147 | 223 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak+y+r+hk+C vhskap+v+v+gle+rfCqqC rf+ l efD++kr CrrrL +hn+ rrk+qa Sof011504 147 CQVEGCKVDLSSAKDYNRKHKICVVHSKAPKVVVAGLERRFCQQCNRFYGLAEFDQNKRNCRRRLTHHNSPRRKPQA 223 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-30 | 139 | 208 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.308 | 144 | 221 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-36 | 145 | 226 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-28 | 147 | 220 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVWDWEHLVP SVSNAVTRHG SANSSGGTLT SSSELGHGSS KSSISASIDS PSGVGNSLEF 60 NFAAVERHVK NTGTNGRVDG SGNSPSSMIA FSPGEPLISL KLGKRAYFEN VCGGQDAKVS 120 APSDVTSAAT VVKKTKVSQQ NAKNWYCQVE GCKVDLSSAK DYNRKHKICV VHSKAPKVVV 180 AGLERRFCQQ CNRFYGLAEF DQNKRNCRRR LTHHNSPRRK PQADTILFQL LTVSTNVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-26 | 147 | 220 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11780 | 0.0 | bud| crown| leaf| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149534.1 | 1e-142 | SBP-transcription factor25 | ||||
Refseq | NP_001352585.1 | 1e-142 | SBP-transcription factor25 | ||||
Refseq | XP_008643717.1 | 1e-142 | squamosa promoter-binding-like protein 11 isoform X1 | ||||
Refseq | XP_008643719.1 | 1e-142 | squamosa promoter-binding-like protein 11 isoform X1 | ||||
Refseq | XP_008643720.1 | 1e-142 | squamosa promoter-binding-like protein 11 isoform X1 | ||||
Swissprot | A2YGR5 | 1e-80 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
Swissprot | Q5Z818 | 1e-80 | SPL12_ORYSJ; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A059Q0F8 | 1e-142 | A0A059Q0F8_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G414805_P05 | 1e-141 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 4e-45 | squamosa promoter binding protein-like 2 |
Publications ? help Back to Top | |||
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