PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ARF | ||||||||
Protein Properties | Length: 239aa MW: 26922.9 Da PI: 10.5986 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.2e-22 | 3 | 96 | 8 | 98 |
-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 sd++++g +++ +++aee+ ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+ + +++el+v+v+r Sof011411 3 SDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPKRHLLTTGWSVFVSSKRLVAGDAFIFM--RGENGELRVGVRR 96 8999********************7556666.59************************************************..449999*****98 PP | |||||||
2 | Auxin_resp | 99.9 | 3.5e-33 | 122 | 207 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++ rr+sGt++g+ ++ + W +S WrsLk Sof011411 122 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKRKISVGMRFKMRFEGDEAPXRRFSGTIIGTGSlpaMSKSLWADSDWRSLK 207 789*************************************************************987522267778********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.364 | 1 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-13 | 1 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-20 | 2 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-17 | 2 | 96 | No hit | No description |
SuperFamily | SSF101936 | 6.18E-38 | 2 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-37 | 2 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 6.9E-32 | 122 | 207 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
XASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPKRHL 60 LTTGWSVFVS SKRLVAGDAF IFMRGENGEL RVGVRRLMRQ VNSMPSSVIS SHNMHLGVLA 120 TASHAISTGT LFSVFYKPRT SRSDFIVSVN KYLEAKKRKI SVGMRFKMRF EGDEAPXRRF 180 SGTIIGTGSL PAMSKSLWAD SDWRSLKGQW DEPSSILRPD RISPWEVEPL DAANPQSXQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-134 | 2 | 232 | 130 | 357 | Auxin response factor 1 |
4ldw_A | 1e-134 | 2 | 232 | 130 | 357 | Auxin response factor 1 |
4ldw_B | 1e-134 | 2 | 232 | 130 | 357 | Auxin response factor 1 |
4ldx_A | 1e-134 | 2 | 232 | 130 | 357 | Auxin response factor 1 |
4ldx_B | 1e-134 | 2 | 232 | 130 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.6365 | 0.0 | inflorescence| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823850.1 | 1e-167 | auxin response factor 9-like | ||||
Swissprot | Q0JCZ4 | 1e-159 | ARFI_ORYSJ; Auxin response factor 9 | ||||
TrEMBL | A0A1D6E9Y4 | 1e-168 | A0A1D6E9Y4_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G017187_P02 | 1e-166 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 1e-133 | auxin response factor 1 |
Publications ? help Back to Top | |||
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