PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 25659.5 Da PI: 5.8414 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.2 | 2.7e-22 | 144 | 234 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + + Sof011361 144 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDALIFLRGD 234 99*****************************7333.34459***********************************************9543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-35 | 138 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-36 | 138 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-21 | 142 | 238 | No hit | No description |
SMART | SM01019 | 7.8E-18 | 144 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-20 | 144 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.18 | 144 | 239 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
XQAAGGGGGG RGGGGEGDAA AAAARGGGGG TEDGMYTELW NLCAGPLVTV PRVGDKVYYF 60 PQGHIEQVEA STNQVAEQHM QLYNLPWKIL CEVMNVELKA EPDNDEVYAQ LTLLPESKPE 120 ENGSSEEMPA APPAALARPR VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP 180 TQELVAKDLH GVEWRFRHIF RGQPRRHLLQ SGWSVFVSAK RLVAGDALIF LRGDNGGTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-100 | 19 | 235 | 2 | 215 | Auxin response factor 1 |
4ldw_A | 1e-100 | 19 | 235 | 2 | 215 | Auxin response factor 1 |
4ldw_B | 1e-100 | 19 | 235 | 2 | 215 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 14 | GGRGGGG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307052.1 | 1e-144 | auxin response factor | ||||
Swissprot | Q2R3F5 | 1e-127 | ARFW_ORYSJ; Auxin response factor 23 | ||||
TrEMBL | K7U085 | 1e-142 | K7U085_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G378580_P01 | 1e-141 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-108 | auxin response factor 2 |