PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27860.3 Da PI: 9.5321 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 45 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL++ ++ + ++ewyfFs++dkky+t++r+nrat++g+Wkatg+dk+++ + Sof011297 45 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKErcRIGTgPQNEWYFFSHKDKKYPTETRTNRATTAGFWKATGRDKAIFLGNA 143 69****************************.9***************953444443456**************************************999 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfy grap+g+ktdW+mheyrl Sof011297 144 RRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 174 *****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-54 | 35 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.077 | 45 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-28 | 46 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
XFSCLSPYSS VAFEELSYNQ AKDISEILAG FARKNMHPGG GPLSVPPGFR FHPTDEELLY 60 YYLRKKVAYE PIDLDVIREI DLNKLEPWDL KERCRIGTGP QNEWYFFSHK DKKYPTETRT 120 NRATTAGFWK ATGRDKAIFL GNARRIGLRK TLVFYIGRAP HGKKTDWIMH EYRLDEENVE 180 NQKMDGWGVG FSASRAFTRK ASIPVKWPHW TTNNFNLFLV LFPEASLPQE HKNIPYLIAX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 43 | 187 | 18 | 160 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.1182 | 6e-31 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021306089.1 | 1e-111 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-100 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A194YJE9 | 1e-109 | A0A194YJE9_SORBI; Uncharacterized protein | ||||
STRING | Sb10g020860.1 | 1e-110 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-90 | NAC family protein |
Publications ? help Back to Top | |||
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