PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010976
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 244aa    MW: 25917.2 Da    PI: 8.7497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-46195PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053116138123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ Cgk F++   L  H  +H
  Sof010976 116 HACSVCGKAFPTYQALGGHKASH 138
                67***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.048116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806116143IPR007087Zinc finger, C2H2
PfamPF139121.1E-12116139IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-7116138No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-7178205No hitNo description
PfamPF139121.1E-8182207IPR007087Zinc finger, C2H2
SMARTSM0035568183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767183210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAVLDAAVMP SPRGRDDVVA AAADQVATTS NSSGTAAEED KDVKTAVQQE HGQGLAKRKR  60
SRRRRDREQQ QLPKEHPTQE EYLAQCLVML ATGRRDGDVP ALASAPPPPQ GQQQDHACSV  120
CGKAFPTYQA LGGHKASHRT RPSPPSAATE VVGDHHEEQK PVLPSSSSAD YAGADNNKPA  180
AAHECNVCGK AFPTGQALGG QKRRHYDRTI GSAAAPARAV FSSSRXXXTE XXHAPPRDAA  240
GRLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.162300.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442402.17e-62zinc finger protein 1
TrEMBLC5YQH92e-60C5YQH9_SORBI; Uncharacterized protein
STRINGSb08g019490.13e-61(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.19e-26zinc-finger protein 1